Description Usage Arguments Value Author(s) See Also Examples
View source: R/fuzzy_clustering.R
Find the groups using fuzzy clustering ##FIND AUTOMATICALLY THE NUMBER OF CORES
1 | fuzzy_clustering(expr.matrix, noCluster = 1)
|
expr.matrix |
A matrix of expression values. Rows are genes, columns are samples |
noCluster |
The number of clusters to be used. ##COULD BE DETERMINATED AUTOMATICALLY?? |
The function return a list of 3 objects
Vector in which every sample is attributed to the most likely cluster
Expression set
Details of fuzzy cmeans
Simon J Pelletier
standardise
,
get_names
,
e1071
1 2 3 4 5 6 | expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
noCluster <- 3
fuzzy <- fuzzy_clustering(expr.matrix,noCluster)
fuzzy$clusters
fuzzy$in_mfuzz
fuzzy$cl_mfuzz
|
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