fuzzy_clustering: Find the groups using fuzzy clustering ##FIND AUTOMATICALLY...

Description Usage Arguments Value Author(s) See Also Examples

View source: R/fuzzy_clustering.R

Description

Find the groups using fuzzy clustering ##FIND AUTOMATICALLY THE NUMBER OF CORES

Usage

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fuzzy_clustering(expr.matrix, noCluster = 1)

Arguments

expr.matrix

A matrix of expression values. Rows are genes, columns are samples

noCluster

The number of clusters to be used. ##COULD BE DETERMINATED AUTOMATICALLY??

Value

The function return a list of 3 objects

clusters

Vector in which every sample is attributed to the most likely cluster

in_mfuzz

Expression set

cl_mfuzz

Details of fuzzy cmeans

Author(s)

Simon J Pelletier

See Also

standardise , get_names , e1071

Examples

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expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
noCluster <- 3
fuzzy <- fuzzy_clustering(expr.matrix,noCluster)
fuzzy$clusters
fuzzy$in_mfuzz
fuzzy$cl_mfuzz

spell098/rnaseq_app documentation built on May 30, 2019, 7:57 a.m.