fuzzy_clustering: Find the groups using fuzzy clustering ##FIND AUTOMATICALLY...
In spell098/rnaseq_app:

Description Usage Arguments Value Author(s) See Also Examples

Find the groups using fuzzy clustering ##FIND AUTOMATICALLY THE NUMBER OF CORES

1	fuzzy_clustering(expr.matrix, noCluster = 1)

`expr.matrix`	A matrix of expression values. Rows are genes, columns are samples
`noCluster`	The number of clusters to be used. ##COULD BE DETERMINATED AUTOMATICALLY??

The function return a list of 3 objects

clusters: Vector in which every sample is attributed to the most likely cluster
in_mfuzz: Expression set
cl_mfuzz: Details of fuzzy cmeans

Simon J Pelletier

standardise , get_names , e1071

expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
noCluster <- 3
fuzzy <- fuzzy_clustering(expr.matrix,noCluster)
fuzzy$clusters
fuzzy$in_mfuzz
fuzzy$cl_mfuzz