Description Usage Arguments Value Author(s) See Also Examples
List of informations on Gene Ontology of selected genes
1 | geneOntology(results, go, typeID = "ensembl_gene_id", ngenes)
|
results |
A topTable with only the genes considered significant (according to the p-value and logFC limits provided in the function results_topTable) |
go |
An object that contain all gene ontology informations for every gene |
typeID |
Type of IDs used as rows in the expression matrix.Default="ensembl_gene_id" |
ngenes |
A list of WGCNA results |
A list of gene ontology informations for all comparisons determinated my the experimental design. For example, if there are 3 groups (a,b,c), 3 comparisons are possible (a-b,a-c,b-c). The object return is a list containing 3 lists named "a-b", etc. Each of these lists contain the following objects:
For every gene ontology that imply at least 1 significant gene,
Simon J Pelletier
annotate_ensembl
annotate_geo
results_topTable
topTable
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