resultsByOntology: Results by ontology Return the rows from the results topTable

In spell098/rnaseq_app:

Description

Results by ontology Return the rows from the results topTable

Usage

resultsByOntology(selectedOntology, result, ontology)

Arguments

selectedOntology	The ontology term selected
ontology	An object
results	The results of one comparison

Examples

expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
results <- readRDS("data/results_LGVD.rds")
annotation1 = annotate_ensembl(rownames(expr.matrix))
go=annotation1[[2]]
typeID=annotation1[[4]]
result <- results[[1]]
ontology <- geneOntology(results,go,typeID,nrow(expr.matrix))
selectedOntology <- names(ontology[[1]][[3]])[1]
resultsByOntology <- resultsByOntology(selectedOntology,result,ontology[[1]])

spell098/rnaseq_app documentation built on May 30, 2019, 7:57 a.m.