Files in spell098/rnaseq_functions2
Contain various functions for rnaseq analysis
DESCRIPTION
NAMESPACE
R/MAPlot.R
R/PCA.R
R/RDA_factors.R
R/WGCNA_modules.R
R/addColorsMatrix.R
R/addColorsMatrixResults.R
R/affy2ensembl.R
R/annotate_ensembl.R
R/annotation_biomart.R
R/annotation_geo.R
R/boxplot_element.R
R/clusteringSummary.R
R/colorNumericValues.R
R/color_groups.R
R/comparisonsPheno.R
R/conditionsChoice.R
R/conversionID.R
R/conversionTable.R
R/convert.R
R/convert_id.R
R/design_contrasts.R
R/export2cytoscape.R
R/exprToBind.R
R/fuzzy_clustering.R
R/geneOntology.R
R/get_comparisons.R
R/get_names.R
R/lm2Contrast.R
R/meanMatrix.R
R/modules_summary.R
R/namesSelectedComparisons.R
R/network.graphite.R
R/numberNames.R
R/order_list.R
R/plotCorrectAttribution.R
R/plotCorrectSubsample.R
R/possibleComparisons.R
R/powerTable.R
R/reactions.R
R/regroupingSamples.R
R/resultsByOntology.R
R/results_summary.R
R/results_topTable.R
R/selectTopReaction.R
R/signifRows.R
R/transcript_count.R
R/unduplicate.R
R/volcanoGgPlot.R
R/volcanoPlot.R
R/wes.R
README.md
affyID.csv
annotateGPL.sh
annotations/affy2ensembl.csv
annotations/affyID.csv
annotations/databases/affygene.csv
annotations/databases/allGO.csv
annotations/databases/allGO.ssv
annotations/databases/allGO.txt
annotations/databases/go_human.ssv
annotations/databases/go_human.txt
annotations/databases/hgnc.csv
annotations/databases/hsapiens_ensembl_affy_hg_u133_plus_2.csv
annotations/databases/hsapiens_ensembl_affy_hg_u95av2.csv
annotations/databases/hsapiens_ensembl_ensembl_gene_id.csv
annotations/databases/hsapiens_ensembl_illumina_humanht_12_v3.csv
annotations/databases/hsapiens_ensembl_illumina_humanht_12_v4.csv
annotations/databases/hsapiens_ensemblensemblaffy_hg_u95av2.csv
annotations/databases/hsapiens_ensemblensemblaffy_hg_u95av2.txt
annotations/databases/rat_symbols.csv
annotations/databases/rat_symbols.txt
annotations/databases/rn5_annotation.txt
annotations/databases/rn5_annotation_3utr.txt
annotations/databases/rn5_annotation_5utr.txt
annotations/databases/rn5_annotation_coding_exons.txt
annotations/databases/rn5_annotation_introns.txt
annotations/databases/rn5_annotation_promoters_upstream_3000.txt
annotations/databases/rnorvegicus_ensembl_ensembl_gene_id.csv
annotations/gene_names.csv
annotations/gene_names.ssv
annotations/genes_annotations.csv
annotations/go.csv
annotations/go.txt
annotations/query
annotations/query.csv
goTable.txt
goTable2.txt
goTable3.txt
goTables/goTable.txt
goTables/goTable2.txt
goTables/goTable3.txt
hgnc_id.txt
hsapiens.hgnc_id.txt
man/MAPlot.Rd
man/PCA.Rd
man/RDA_factors.Rd
man/WGCNA_modules.Rd
man/addColorsMatrix.Rd
man/addColorsMatrixResults.Rd
man/affy2ensembl.Rd
man/annotate_ensembl.Rd
man/annotation_biomart.Rd
man/annotation_geo.Rd
man/boxplot_element.Rd
man/clusteringSummary.Rd
man/colorNumericValues.Rd
man/color_groups.Rd
man/comparisonsPheno.Rd
man/conditionsChoice.Rd
man/conversionID.Rd
man/convert_id.Rd
man/design_contrasts.Rd
man/export2cytoscape.Rd
man/exprToBind.Rd
man/fuzzy_clustering.Rd
man/geneOntology.Rd
man/get_comparisons.Rd
man/get_names.Rd
man/lm2Contrast.Rd
man/meanMatrix.Rd
man/modules_summary.Rd
man/namesSelectedComparisons.Rd
man/network.graphite.Rd
man/numberNames.Rd
man/order_list.Rd
man/plotCorrectAttribution.Rd
man/plotCorrectSubsample.Rd
man/possibleComparisons.Rd
man/reactions.Rd
man/regroupingSamples.Rd
man/resultsByOntology.Rd
man/results_summary.Rd
man/results_topTable.Rd
man/selectTopReaction.Rd
man/signifRows.Rd
man/transcript_count.Rd
man/unduplicate.Rd
man/volcanoGgPlot.Rd
man/volcanoPlot.2.Rd
man/wes.Rd
martservice
names.txt
powerTables.rds
query_results.tsv
result.txt
resultTableTest.rds
resultsList.rds
rn5/rn5_annotation.txt
rsconnect/shinyapps.io/simonpelletier/rnaseq_analysis.dcf
rsconnect/shinyapps.io/simonpelletier/rnaseq_app.dcf
server.R
test.R
test.txt
tests/genes_annotation_unique.csv
tests/tmp
tests/topTable1.rds
tests/topTable2.rds
ui.R
