unduplicate: Create a new expression matrix with means of technical...
In spell098/rnaseq_functions2: Contain various functions for rnaseq analysis
Description
Create a new expression matrix with means of technical replicates
Usage
1
unduplicate(comparisonsTable, selectedReplicates, expr.matrix)
Examples
1
2
3
4
5
6
gset <- getGEO('GSE54839', GSEMatrix =TRUE) #GSE61276 GSE12654
exprset <- gset[[1]]
expr.matrix <- exprs(exprset)
comparisons <- comparisonsPheno(exprset,NULL)[[1]]
comparisonsTable <- comparisonsPheno(exprset,NULL)[[2]]
selectedReplicates <- "source_name_ch1"
spell098/rnaseq_functions2 documentation built on May 30, 2019, 7:57 a.m.
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Description
Create a new expression matrix with means of technical replicates
Usage
1 | unduplicate(comparisonsTable, selectedReplicates, expr.matrix)
|
Examples
1 2 3 4 5 6 | gset <- getGEO('GSE54839', GSEMatrix =TRUE) #GSE61276 GSE12654
exprset <- gset[[1]]
expr.matrix <- exprs(exprset)
comparisons <- comparisonsPheno(exprset,NULL)[[1]]
comparisonsTable <- comparisonsPheno(exprset,NULL)[[2]]
selectedReplicates <- "source_name_ch1"
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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