transcript_count: Counts the number of significant transcripts of the same gene

In spell098/rnaseq_functions2: Contain various functions for rnaseq analysis

Description

Counts the number of significant transcripts of the same gene

Usage

transcript_count(result, annotations, type = "ensembl_gene_id")

Arguments

result	A matrix of data. Columns = samples, rows = genes,transcripts,CpG...
annotations	The design of the experiment (object)
type	The type of ensembl ID used, e.g. ensembl_gene_id

Value

Linear model contrast ...

Author(s)

Simon J Pelletier

Examples

expr.matrix=readRDS("data/expr_matrix_LGVD.rds")
results=readRDS("data/results_LGVD.rds")
result <- results[[1]]
annotations = annotate_ensembl(rownames(expr.matrix),type="ensembl_gene_id")[[1]]
transcriptCount <- transcript_count(result,annotations)

spell098/rnaseq_functions2 documentation built on May 30, 2019, 7:57 a.m.