WGCNA_modules: Find to which genes belong to the same modules
In spell098/rnaseq_functions2: Contain various functions for rnaseq analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Find to which genes belong to the same modules
Usage
1
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3
WGCNA_modules(expr.matrix, pow, names, deepSplit = 2, minModSize = 30,
saveTOMs = TRUE, minKMEtoStay = 0, mergeCutHeight = 0.25,
numericLabels = TRUE, pamRespectsDendro = FALSE)
Arguments
expr.matrix
A matrix of expression values. Rows are genes, columns are samples
ncores
Number of cores available for parallel programming (foreach function)
names.unique
Names of all groups of sample
Value
A list of WGCNA results
Author(s)
Simon J Pelletier
See Also
Examples
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expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
results <- readRDS("data/results_LGVD.rds")
bnet = WGCNA_modules(expr.matrix,pow=3,names=names2)
spell098/rnaseq_functions2 documentation built on May 30, 2019, 7:57 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Find to which genes belong to the same modules
Usage
1 2 3 | WGCNA_modules(expr.matrix, pow, names, deepSplit = 2, minModSize = 30,
saveTOMs = TRUE, minKMEtoStay = 0, mergeCutHeight = 0.25,
numericLabels = TRUE, pamRespectsDendro = FALSE)
|
Arguments
expr.matrix |
A matrix of expression values. Rows are genes, columns are samples |
ncores |
Number of cores available for parallel programming (foreach function) |
names.unique |
Names of all groups of sample |
Value
A list of WGCNA results
Author(s)
Simon J Pelletier
See Also
Examples
1 2 3 4 | expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
results <- readRDS("data/results_LGVD.rds")
bnet = WGCNA_modules(expr.matrix,pow=3,names=names2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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