exprToBind: Binds an expression matrix with colors corresponding to the...
In spell098/rnaseq_functions2: Contain various functions for rnaseq analysis

Description Usage Arguments Value Author(s) See Also Examples

Binds an expression matrix with colors corresponding to the module of the elements in the rows (genes,transcripts...)

1	exprToBind(bnet, expr.matrix)

`bnet`	A list of WGCNA results
`expr.matrix`	A matrix of expression values. Rows are genes, columns are samples
`typeID`	Type of IDs used as rows in the expression matrix.Default="ensembl_gene_id"

An expression matrix additonnal informations with two columns added as the first columns of the matrix. The columns are, in order:

module: Contain the module of the element (gene, transcript...)
ID: contain the IDs used afterwards to merge all of the additional annotations in subsequent operation in the pipeline

Simon J Pelletier

topTable

ggplot

bnet <- readRDS("data/bnet_LGVD.rds")
expr.matrix <- readRDS("data/expr_matrix_LGVD.rds")
typeID <- "ensembl_gene_id"
expr.toBind <- exprToBind(bnet,expr.matrix,typeID)