conversionID: Convert any type of ID to ensembl ids
In spell098/rnaseq_functions2: Contain various functions for rnaseq analysis
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Convert any type of ID to ensembl ids
Convert any type of ID to ensembl ids
Usage
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conversionID(specie_genome = "rnorvegicus_gene_ensembl",
attribute = "efg_agilent_wholegenome_4x44k_v1")
conversionID(specie_genome = "rnorvegicus_gene_ensembl",
attribute = "efg_agilent_wholegenome_4x44k_v1")
Arguments
specie_genome
The ensembl ID of the genome studied e.g. rnorvegicus_gene_ensembl
attribute
The type of ID to convert to ensembl_gene_id and ensembl_transcript_id
specie_genome
The ensembl ID of the genome studied e.g. rnorvegicus_gene_ensembl
attribute
The type of ID to convert to ensembl_gene_id and ensembl_transcript_id
Value
A 3 column data.frame: ensembl_gene_id ensembl_transcript_id attribute(id chosen)
A 3 column data.frame: ensembl_gene_id ensembl_transcript_id attribute(id chosen)
Author(s)
Simon J Pelletier
Simon J Pelletier
Examples
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specie_genome = "hsapiens_gene_ensembl"
attribute <- "affy_hg_u95av2"
externalSymbol <- "hgnc_symbol"
ensemblID <- conversionID(specie_genome,attribute,externalSymbol)
specie_genome = "hsapiens_gene_ensembl"
attribute <- "affy_hg_u95av2"
ensemblID <- conversionTable(specie_genome,attribute)
spell098/rnaseq_functions2 documentation built on May 30, 2019, 7:57 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Convert any type of ID to ensembl ids
Convert any type of ID to ensembl ids
Usage
1 2 3 4 5 | conversionID(specie_genome = "rnorvegicus_gene_ensembl",
attribute = "efg_agilent_wholegenome_4x44k_v1")
conversionID(specie_genome = "rnorvegicus_gene_ensembl",
attribute = "efg_agilent_wholegenome_4x44k_v1")
|
Arguments
specie_genome |
The ensembl ID of the genome studied e.g. rnorvegicus_gene_ensembl |
attribute |
The type of ID to convert to ensembl_gene_id and ensembl_transcript_id |
specie_genome |
The ensembl ID of the genome studied e.g. rnorvegicus_gene_ensembl |
attribute |
The type of ID to convert to ensembl_gene_id and ensembl_transcript_id |
Value
A 3 column data.frame: ensembl_gene_id ensembl_transcript_id attribute(id chosen)
A 3 column data.frame: ensembl_gene_id ensembl_transcript_id attribute(id chosen)
Author(s)
Simon J Pelletier
Simon J Pelletier
Examples
1 2 3 4 5 6 7 | specie_genome = "hsapiens_gene_ensembl"
attribute <- "affy_hg_u95av2"
externalSymbol <- "hgnc_symbol"
ensemblID <- conversionID(specie_genome,attribute,externalSymbol)
specie_genome = "hsapiens_gene_ensembl"
attribute <- "affy_hg_u95av2"
ensemblID <- conversionTable(specie_genome,attribute)
|
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