convert_id: Convert any type of ID to ensembl ids

In spell098/rnaseq_functions2: Contain various functions for rnaseq analysis

Description

Convert any type of ID to ensembl ids

Usage

convert_id(specie_genome = "rnorvegicus_gene_ensembl",
  attribute = "efg_agilent_wholegenome_4x44k_v1",
  externalSymbol = "rgd_symbol")

Arguments

specie_genome	The ensembl ID of the genome studied e.g. rnorvegicus_gene_ensembl
attribute	The type of ID to convert to ensembl_gene_id and ensembl_transcript_id

Value

A 3 column data.frame: ensembl_gene_id ensembl_transcript_id attribute(id chosen)

Author(s)

Simon J Pelletier

Examples

specie_genome = "hsapiens_gene_ensembl"
attribute <- "affy_hg_u95av2"
externalSymbol <- "hgnc_symbol"
ensemblID <- conversionID(specie_genome,attribute,externalSymbol)

spell098/rnaseq_functions2 documentation built on May 30, 2019, 7:57 a.m.