avg.timeseries.plot: Calculate matrix of averages from meandat files and plot in...
In suvarzz/MNuc: MNuc

Calculate matrix of averages from meandat files and plot in time series

avg.timeseries.plot(indir, expnames, timepoints, splitnames, outdir,
  title = "Average signal in time series plot", xlab = "Time",
  ylab = "Signal intensity", filename = "avg_timeseries_plot",
  frommin = 0, savemx = FALSE)

`indir`	Input director-y/-ies containing meandat files (xxx.mean.dat.gz). Files within one directory may be split by groups/quantiles etc.
`expnames`	Names of experiments using for plot (must be the same as number of entry directories in indir).
`timepoints`	Names of timepoints for plot (must be in the same order as in meandat files).
`splitnames`	Names of split meandat files (e.g by groups or quantiles of replication time or expression levels).
`outdir`	Output directory.
`title`	Main title of the plot
`filename`	Name of the output plot file
`frommin`	How many bp skeep from minimal value. Useful if necessary to exclude a region wihin nucleosome free regions (NFR), e.g. near TSS or ARS.
`savemx`	Save data matrix as csv for plots