bamcov.plot: Bam Coverage Statter Plot

Description Usage Arguments

View source: R/bamcov.plot2.R View source: R/bamcov.plot.R

Description

Bam Coverage Statter Plot

Bam Coverage Statter Plot

Usage

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  bamcov.plot(indir1 = "/home/suvar/Projects/007_ChIPseq_HU-SR/output/bam_cov/Et/IP",
  indir2 = "/home/suvar/Projects/007_ChIPseq_HU-SR/output/bam_cov/IAA/IP",
  outdir = "/home/suvar/Desktop/", lables = c("HU-SR 2h", "HU-SR 0'",
  "HU-SR 10'", "HU-SR 20'", "HU-SR 30'", "HU-SR 40'", "HU-SR 50'",
  "HU-SR 60'", "HU-SR 70'", "HU-SR 80'", "HU-SR 90'"),
  filename = "BamCoverage_plot.png", log = FALSE)


  bamcov.plot(indir1 = "/home/suvar/Projects/007_ChIPseq_HU-SR/output/bam_cov/Et/IP",
  indir2 = "/home/suvar/Projects/007_ChIPseq_HU-SR/output/bam_cov/IAA/IP",
  outdir = "/home/suvar/Desktop/", lables = c("HU-SR 2h", "HU-SR 0'",
  "HU-SR 10'", "HU-SR 20'", "HU-SR 30'", "HU-SR 40'", "HU-SR 50'",
  "HU-SR 60'", "HU-SR 70'", "HU-SR 80'", "HU-SR 90'"),
  filename = "BamCoverage_plot.png", log = FALSE)

Arguments

outdir

Output directory

indir

Directory containing bam coverage binned bedgraph files

indir

Directory containing bam coverage binned bedgraph files

outdir

Output directory


suvarzz/MNuc documentation built on Aug. 11, 2019, 6:45 a.m.