View source: R/features.avg.plot.R
All features averages plot
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indir |
Input directory containing bedgraph files. |
outdir |
Output directory. |
fdir |
Directory containing different features in files. |
chromsizes |
Text file containing sizes of all chromosomes in columns (chromosome ~ size). |
title |
Main title of the plot. |
smooth |
If lines between points are smoothed. |
log |
Boolean, if log difference of signal is needed. |
nlog |
Id of sample in files in 'indir' which is used for log difference (e.g. 1 - first sample) 'log' must be TRUE, log.num must be NULL. |
log.num |
Numeric to calculate log difference (e.g. 21.5). 'log' must be TRUE, nlog must be NULL. |
filename |
Name of the output plot file |
exclude_seq |
Optional argument to exclude chromosomes. |
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