features.avg.plot: All features averages plot
In suvarzz/MNuc: MNuc

All features averages plot

features.avg.plot(indir, outdir, fdir, chromsizes = "sc",
  lables = NULL, title = "All features averages plot",
  smooth = FALSE, log = FALSE, nlog = NULL, log.num = NULL,
  xlab = "Time", ylab = "Signal intensity",
  filename = "All_features_avg_plot", exclude_seq = "chrM",
  ylim = NULL)

`indir`	Input directory containing bedgraph files.
`outdir`	Output directory.
`fdir`	Directory containing different features in files.
`chromsizes`	Text file containing sizes of all chromosomes in columns (chromosome ~ size).
`title`	Main title of the plot.
`smooth`	If lines between points are smoothed.
`log`	Boolean, if log difference of signal is needed.
`nlog`	Id of sample in files in 'indir' which is used for log difference (e.g. 1 - first sample) 'log' must be TRUE, log.num must be NULL.
`log.num`	Numeric to calculate log difference (e.g. 21.5). 'log' must be TRUE, nlog must be NULL.
`filename`	Name of the output plot file
`exclude_seq`	Optional argument to exclude chromosomes.