meta.plot: TSS & ARS regions for metaplot These functions allows to...
In suvarzz/MNuc: MNuc

Description Usage Arguments Value Author(s) See Also

TSS & ARS regions for metaplot

These functions allows to create txt file with a list of TSS or ARS with a given size.

meta.plot(indir, outdir, col.file, filename = "Meta_plot",
  curnames = NULL, ncur = NULL, labels = NULL, log = FALSE,
  smooth = FALSE, spar = 0.85, setmin = FALSE, setmink = FALSE,
  main = "Meta Plot", xlab = "Distance from feature, bp",
  ylab = "Signal", xlim = NULL, ylim = NULL,
  legendpos = c("bottomright", "bottom", "bottomleft", "left", "topleft",
  "top", "topright", "right", "center"), las = 1, cex.lab = 1,
  cex.axis = 1)

`indir`	Input directory with means DAT files (mean.dat.gz) generated by `meandata` funcion.
`outdir`	Output directory.
`col.file`	Text file containing list of colors in the first column.
`filename`	Name of output file.
`curnames`	A vector containing desiered legend names. The order of names must correspond to the data in the mean.dat files.
`ncur`	Numeric vector of lines to draw (e.g c(2,4,6)). The first element in 'ncur' is a denominator if 'log' argument is TRUE.
`labels`	Vector of names for multiple plot.
`log`	Log2 of difference. The denominator is the first element in 'ncur' argument.
`main`	Main header of the plot.
`xlab`	X-axis lable.
`ylab`	Y-axis lable.
`xlim`	The x limits (x1, x2) of the plot.
`ylim`	The y limins (y1, y2) of the plot.
`legendpos`	Position of the legend. Possible values: "bottomright", "bottom", "bottomleft", "left", "topleft", "top", "topright", "right", "center".