meta.data: Meta data generator

Description Usage Arguments Value

View source: R/meta.data.R

Description

Generate meta data for metaplots.

Usage

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meta.data(meta.csv, bdg.data, outdir, upstream = NULL,
  downstream = NULL, chromsizes = "sc", threads = NULL,
  stretch = FALSE)

Arguments

meta.csv

csv file with meta features.

bdg.data

Directory with bedgraph files of signal peaks (e.g. after MACS2 peak calling).

upstream

Upstream nucleotides from feature.

downstream

Downstrem nucleotides from feature.

chromsizes

Text file containing sizes of all chromosomes in columns (chromosome ~ size).

threads

Optional parameter of number of working processors. If not set, all-1 will be taken.

Value

TSS regions as CSV file dat.gz


suvarzz/MNuc documentation built on Aug. 11, 2019, 6:45 a.m.