heatmap.win.avg: Heatmap of binned averages from bedgraph files

In suvarzz/MNuc: MNuc

Description

Heatmap of binned averages from bedgraph files

Usage

heatmap.win.avg(indir, outdir, chromosome = c(1, 2, 3, 4, 5, 6, 7, 8, 9,
  10, 11, 12, 13, 14, 15, 16), norm = NULL, fname = "HeatMap",
  log = TRUE, nlog = NULL, width = NULL, step = NULL,
  comb = TRUE, threads = 2)

Arguments

indir	Directory containing bedgraph files with peaks
outdir	Output directory
chromosome	Chromosome to draw
norm	Vector of normalization coeficients
fname	File name
log	Log difference (to common average)
nlog	Given number to compair (e.g. global mean). It is not calculated if define.
comb	Create pdf file with combined heatmaps for all chromosomes (all png in the output directory)
threads	How many logical processors are available?

Details

Heatmap plot of binned averages from bedgraph files

suvarzz/MNuc documentation built on Aug. 11, 2019, 6:45 a.m.