effNbIndepTestsPerChr: Multiple testing

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Multiple testing

Description

Return the effective number of independent tests according to the method of Galwey (2009) for a given chromosome after estimating the LD along it.

Usage

effNbIndepTestsPerChr(lcorX, method = "galwey", pkg = "base", k, nb.cores = 1)

Arguments

lcorX	list of correlation matrices between SNP genotypes, one per chromosome (see estimLdPerChr)
method	for now, only "galwey" is implemented
pkg	package to compute the eigenvalues of corX if evCorX is not supplied (base/RSpectra)
k	number of eigenvalues requested (used by the RSpectra package)
nb.cores	number of cores to to run each chromosome in parallel

Value

numeric

Author(s)

Maxence Remerand, Timothee Flutre

See Also

effNbIndepTests, adjustThreshGalwey

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.