significantTests: Multiple tests correction

In timflutre/rutilstimflutre: Timothee Flutre's personal R code

Multiple tests correction

Description

Call significance tests after multiplicity correction based on various criteria (FWER, FDR) and various procedure for each of them.

Usage

significantTests(
  pvalues,
  thresh.fwer.bonf = c(0.01, 0.05, 0.1),
  thresh.fwer.sidak = c(0.01, 0.05, 0.1),
  thresh.fdr.bh = c(0.01, 0.05, 0.1),
  thresh.fdr.storey = NULL,
  pfdr = TRUE
)

Arguments

pvalues	vector of p values (can contain NA's)
thresh.fwer.bonf	if not NULL, vector of significance thresholds for the FWER criterion and the Bonferroni procedure
thresh.fwer.sidak	if not NULL, vector of significance thresholds for the FWER criterion and the Sidak procedure
thresh.fdr.bh	if not NULL, vector of significance thresholds for the FDR criterion and the Benjamini-Hochberg procedure
thresh.fdr.storey	if not NULL, vector of significance thresholds for the FDR criterion and the Storey procedure (via the qvalue package)
pfdr	logical passed to qvalue()

Value

list

Author(s)

Timothee Flutre

See Also

qqplotPval, binaryClassif, adjustPvaluesSidak

timflutre/rutilstimflutre documentation built on Feb. 7, 2024, 8:17 a.m.