AccessiblePeaks: Accessible peaks

In timoast/signac: Analysis of Single-Cell Chromatin Data

Accessible peaks

Description

Find accessible peaks in a set of cells

Usage

AccessiblePeaks(
  object,
  assay = NULL,
  idents = NULL,
  cells = NULL,
  min.cells = 10
)

Arguments

object	A Seurat object
assay	Name of assay to use
idents	A set of identity classes to find accessible peaks for
cells	A vector of cells to find accessible peaks for
min.cells	Minimum number of cells with the peak accessible (>0 counts) for the peak to be called accessible

Value

Returns a vector of peak names

timoast/signac documentation built on Aug. 23, 2024, 1:48 a.m.