ClosestFeature: Closest Feature

In timoast/signac: Analysis of Single-Cell Chromatin Data

Closest Feature

Description

Find the closest feature to a given set of genomic regions

Usage

ClosestFeature(object, regions, annotation = NULL, ...)

Arguments

object	A Seurat object
regions	A set of genomic regions to query
annotation	A GRanges object containing annotation information. If NULL, use the annotations stored in the object.
...	Additional arguments passed to StringToGRanges

Value

Returns a dataframe with the name of each region, the closest feature in the annotation, and the distance to the feature.

Examples

ClosestFeature(
  object = atac_small,
  regions = head(granges(atac_small))
)

timoast/signac documentation built on April 5, 2024, 1:34 a.m.