ConvertMotifID: Convert between motif name and motif ID

In timoast/signac: Analysis of Single-Cell Chromatin Data

Convert between motif name and motif ID

Description

Converts from motif name to motif ID or vice versa. To convert common names to IDs, use the name parameter. To convert IDs to common names, use the id parameter.

Usage

ConvertMotifID(object, ...)

## Default S3 method:
ConvertMotifID(object, name, id, ...)

## S3 method for class 'Motif'
ConvertMotifID(object, ...)

## S3 method for class 'ChromatinAssay'
ConvertMotifID(object, ...)

## S3 method for class 'Assay'
ConvertMotifID(object, ...)

## S3 method for class 'StdAssay'
ConvertMotifID(object, ...)

## S3 method for class 'Seurat'
ConvertMotifID(object, assay = NULL, ...)

Arguments

object	A Seurat, ChromatinAssay, or Motif object
...	Arguments passed to other methods
name	A vector of motif names
id	A vector of motif IDs. Only one of name and id should be supplied
assay	For Seurat object. Name of assay to use. If NULL, use the default assay

Value

Returns a character vector with the same length and order as the input. Any names or IDs that were not found will be stored as NA.

timoast/signac documentation built on Aug. 23, 2024, 1:48 a.m.