coverage-ChromatinAssay-method: Coverage of a ChromatinAssay object

coverage,ChromatinAssay-methodR Documentation

Coverage of a ChromatinAssay object

Description

This is the coverage method for ChromatinAssay objects.

Usage

## S4 method for signature 'ChromatinAssay'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

## S4 method for signature 'Seurat'
coverage(
  x,
  shift = 0L,
  width = NULL,
  weight = 1L,
  method = c("auto", "sort", "hash")
)

Arguments

x

A ChromatinAssay object

shift

How much each range should be shifted before coverage is computed. See coverage in the IRanges package.

width

Specifies the length of the returned coverage vectors. See coverage in the IRanges package.

weight

Assigns weight to each range in x. See coverage in the IRanges package.

method

See coverage in the IRanges package

Functions

  • coverage(ChromatinAssay): method for ChromatinAssay objects

  • coverage(Seurat): method for Seurat objects

See Also

  • coverage-methods in the IRanges package.

  • coverage-methods in the GenomicRanges package

  • ChromatinAssay-class


timoast/signac documentation built on Jan. 1, 2023, 7:39 a.m.