CoverageBrowser: Genome browser

Description Usage Arguments Value

View source: R/visualization.R

Description

Interactive version of the CoveragePlot function. Allows altering the genome position interactively. The current view at any time can be saved to a list of ggplot objects using the "Save plot" button, and this list of plots will be returned after ending the browser by pressing the "Done" button.

Usage

1
CoverageBrowser(object, region, assay = NULL, sep = c("-", "-"), ...)

Arguments

object

A Seurat object

region

A set of genomic coordinates

assay

Name of assay to use

sep

Separators for genomic coordinates if region supplied as a string rather than GRanges object

...

Parameters passed to CoveragePlot

Value

Returns a list of ggplot objects


timoast/signac documentation built on Dec. 14, 2021, 11:34 p.m.