AddMotifs | R Documentation |
Construct a Motif
object containing DNA sequence motif
information and add it to an existing Seurat object or ChromatinAssay.
If running on a Seurat object, AddMotifs
will also run
RegionStats
to compute the GC content of each peak and store
the results in the feature metadata.
AddMotifs(object, ...) ## Default S3 method: AddMotifs(object, genome, pfm, verbose = TRUE, ...) ## S3 method for class 'ChromatinAssay' AddMotifs(object, genome, pfm, verbose = TRUE, ...) ## S3 method for class 'Assay' AddMotifs(object, genome, pfm, verbose = TRUE, ...) ## S3 method for class 'Seurat' AddMotifs(object, genome, pfm, assay = NULL, verbose = TRUE, ...)
object |
A Seurat object or ChromatinAssay object |
... |
Additional arguments passed to other methods |
genome |
A |
pfm |
A |
verbose |
Display messages |
assay |
Name of assay to use. If NULL, use the default assay |
When running on a ChromatinAssay
or Seurat
object,
returns a modified version of the input object. When running on a matrix,
returns a Motif
object.
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