DepthCor: Plot sequencing depth correlation

Description Usage Arguments Value Examples

View source: R/visualization.R

Description

Compute the correlation between total counts and each reduced dimension component.

Usage

1
DepthCor(object, assay = NULL, reduction = "lsi", n = 10, ...)

Arguments

object

A Seurat object

assay

Name of assay to use for sequencing depth. If NULL, use the default assay.

reduction

Name of a dimension reduction stored in the input object

n

Number of components to use. If NULL, use all components.

...

Additional arguments passed to cor

Value

Returns a ggplot object

Examples

1
DepthCor(object = atac_small)

timoast/signac documentation built on Dec. 14, 2021, 11:34 p.m.