bubblesort_index | Bubblesort Index |
calc_all_hmm_diff_parallel | HMM segmentation for each gene |
calc_correlation | Calculate correlation of gene expression with pseudotime |
change_index | Change Index |
distribution_plot | Visualization of G0-like distribution in mean scores |
ensembl_to_mgi | Gene name conversion: ENSEMBL -> MGI |
entrez_to_mgi | Gene name conversion: ENTREZ -> MGI |
filter_exp | Filter genes |
gene_selection | Selects significant genes |
gene_selection_intersection | Selects significant genes |
get_gene_cluster | Gene Clustering |
get_GO_exp | Preprocess Gene Expression |
get_specific_gene_exprs | Search for specific gene expression |
hamiltonian_path_as | Hamiltonian Path - Modified Arbitrary Insertion |
hamiltonian_path_force | Hamiltonian path - by brute force |
infer_GO_summaries | Infer Gene Ontology summaries |
kendall_correlation | Kendall Correlation |
kl_cpp | Fast implementation of KL distance |
kmeans_clustering | Kmeans Clustering - returns classification result |
llorens_exprs | Llorens-B - single cell neural stem cells dataset. |
llorens_labels | Llorens-B - single cell neural stem cells dataset. |
mean_score_plot | Visualization of G0-like distribution in mean scores along a... |
mgh107_portal_exprs | MGH107 - single cell glioma dataset of MGH107 patient. |
mgh107_portal_labels | MGH107 - single cell glioma dataset of MGH107 patient. |
mgi_to_entrez | Gene name conversion: MGI -> ENTREZ |
plot_cycle_diff_3d | Coupling cell cycle and differentiation 3-D plots |
plot_diff_3d | Coupling cell cycle and differentiation 3-D plots - Gene... |
plot_gene_exprs | Plot function for specific gene expression changes |
plot_heatmap_analysis | Heatmap Analysis |
plot_hmm_full | Plot function for HMM & gene expression changes |
plot_specific_gene_exprs | Plot function for specific gene expression changes |
redpath | redPATH Pseudotime |
statistical_test | Identification of G0-like cells |
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