mean_score_plot: Visualization of G0-like distribution in mean scores along a...
In tinglab/redPATH: Reconstructing the pseudo development time of cell lineages in single cell RNA-Seq data and applications in cancer.
Description
Usage
Arguments
Examples
Description
Provides mean score expression changees along the cell cycle time-series with classification of different cell clusters.
Usage
1
mean_score_plot(mean_scores, kmean_result, ordIndex)
Arguments
mean_scores
The mean score results returned from the reCAT software, "get_score"
kmean_result
The classification of kmeans clustering result.
ordIndex
The order obtained from reCAT, "get_ordIndex" which returns the cell cycle time-series of the data.
Examples
1
2
3
4
5
cycle_mean_scores <- get_score(t(test_exp))$mean_score
kmean_classification <- kmeans_clustering(cycle_mean_scores)
reCAT_ordIndex <- get_ordIndex(test_exp, threadnum = 2)
require(scater)
mean_score_plot(cycle_mean_scores, kmean_classification, reCAT_ordIndex)
tinglab/redPATH documentation built on May 31, 2019, 10:37 a.m.
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Description Usage Arguments Examples
Description
Provides mean score expression changees along the cell cycle time-series with classification of different cell clusters.
Usage
1 | mean_score_plot(mean_scores, kmean_result, ordIndex)
|
Arguments
mean_scores |
The mean score results returned from the reCAT software, "get_score" |
kmean_result |
The classification of kmeans clustering result. |
ordIndex |
The order obtained from reCAT, "get_ordIndex" which returns the cell cycle time-series of the data. |
Examples
1 2 3 4 5 | cycle_mean_scores <- get_score(t(test_exp))$mean_score
kmean_classification <- kmeans_clustering(cycle_mean_scores)
reCAT_ordIndex <- get_ordIndex(test_exp, threadnum = 2)
require(scater)
mean_score_plot(cycle_mean_scores, kmean_classification, reCAT_ordIndex)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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