Description Usage Arguments Examples
This function reduces the gene expression matrix to selected Gene Ontology genes.
1 2 | get_GO_exp(gene_cell_matrix, gene_type = "gene_names",
organism = "mouse", takelog = T)
|
gene_cell_matrix |
A genes (row) by cells (col) matrix. |
gene_type |
The type of gene names. Default is "gene_names" - ie "HOPX", alternatively "entrez" is provided. |
organism |
The type of species the dataset belongs to: defaults to "mouse". "human" option is available. |
takelog |
Defaults to TRUE. Whether to perform log2(exprs + 1) |
1 2 | subset_GO_data <- get_GO_exp(data, gene_type = "gene_names", organism = "human", takelog = F)
filtered_GO_data <- filter_exp(subset_GO_data, dispersion_threshold = 10, threads = 2)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.