change_index: Change Index
In tinglab/redPATH: Reconstructing the pseudo development time of cell lineages in single cell RNA-Seq data and applications in cancer.
Description
Usage
Arguments
Examples
Description
It calculates the change index of the ordered cells. Evaluation in the range of [0, 1] with 1 being perfectly aligned.
Usage
1
change_index(cell_labels, pseudotime, order = F)
Arguments
cell_labels
The cell type labels
pseudotime
The pseudo time / order index calculated from various softwares.
order
Defaults to FALSE for input of pseudo-time, TRUE for input of an order index of cells
Examples
1
ci <- change_index(cell_labels, redpath_pseudotime, order = F)
tinglab/redPATH documentation built on May 31, 2019, 10:37 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
It calculates the change index of the ordered cells. Evaluation in the range of [0, 1] with 1 being perfectly aligned.
Usage
1 | change_index(cell_labels, pseudotime, order = F)
|
Arguments
cell_labels |
The cell type labels |
pseudotime |
The pseudo time / order index calculated from various softwares. |
order |
Defaults to FALSE for input of pseudo-time, TRUE for input of an order index of cells |
Examples
1 | ci <- change_index(cell_labels, redpath_pseudotime, order = F)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.