Description Usage Arguments Examples
It calculates the highest kendall correlation of the ordered cells. Evaluation in the range of [-1, 1] with 1 being perfectly aligned.
1 | kendall_correlation(cell_labels_int, pseudotime, order = F)
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cell_labels_int |
The cell type labels written in terms of int, with ordering of cell types. For example, qNSC -> aNSC -> NPC becomese 1 -> 2 -> 3. |
pseudotime |
The pseudo time / order index calculated from various softwares. |
order |
Defaults to FALSE for input of pseudo-time, TRUE for input of an order index of cells |
1 | kc <- kendall_correlation(cell_labels_int, redpath_pseudotime, order = F)
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