Description Usage Arguments Examples
This function selects the significant genes from 2 correlation vectors (intersecting genes)
1 2 | gene_selection_intersection(full_gene_exprs, pseudo_time,
correlation_vector, correlation_vector2 = NULL, threshold = 0.5)
|
full_gene_exprs |
A gene (row) by cell (col) gene expression matrix with all genes. |
pseudo_time |
The pseudo development time |
correlation_vector |
The calculated correlation vector of each gene (from calc_correlation) |
correlation_vector2 |
Genes will be selected if the threshold satisfies BOTH correlation vectors. |
threshold |
The threshold cut-off to retain significant genes. Defaults to 0.5 |
1 2 3 | dcor_result <- calc_correlation(full_exprs_matrix, redpath_pseudotime, type = "dcor")
mic_result <- calc_correlation(full_exprs_matrix, redpath_pseudotime, type = "mic")
selected_result <- gene_selection(full_exprs_matrix, redpath_pseudotime, dcor_result, mic_result, threshold = 0.5)
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