plot_diff_3d: Coupling cell cycle and differentiation 3-D plots - Gene...
In tinglab/redPATH: Reconstructing the pseudo development time of cell lineages in single cell RNA-Seq data and applications in cancer.
Description
Usage
Arguments
Examples
Description
This function incorporates output from reCAT and redPATH to illustrate some relationship between cell proliferation & differentiation.
Observing the gradual change of specific marker genes
Usage
1
2
plot_diff_3d(recat_input, redpath_pseudotime, color_label = NULL,
marker_gene_exprs = NULL)
Arguments
recat_input
This is the normalizedResultLst obtained from reCAT software. It's generally save in a .RData file started with bestEnsemble...
redpath_pseudotime
Pseudo development time for differentiation
color_label
Cell type labels
marker_gene_exprs
Marker genes matrix (genes of interest) obtained from "get_specific_gene_exprs"
Examples
1
2
p1 <- plot_diff_3d(normalizedResultLst, redpath_pseudotime, cell_cycle_labels, cdk_gene_exprs)
p1
tinglab/redPATH documentation built on May 31, 2019, 10:37 a.m.
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Description Usage Arguments Examples
Description
This function incorporates output from reCAT and redPATH to illustrate some relationship between cell proliferation & differentiation. Observing the gradual change of specific marker genes
Usage
1 2 | plot_diff_3d(recat_input, redpath_pseudotime, color_label = NULL,
marker_gene_exprs = NULL)
|
Arguments
recat_input |
This is the normalizedResultLst obtained from reCAT software. It's generally save in a .RData file started with bestEnsemble... |
redpath_pseudotime |
Pseudo development time for differentiation |
color_label |
Cell type labels |
marker_gene_exprs |
Marker genes matrix (genes of interest) obtained from "get_specific_gene_exprs" |
Examples
1 2 | p1 <- plot_diff_3d(normalizedResultLst, redpath_pseudotime, cell_cycle_labels, cdk_gene_exprs)
p1
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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