plot_cycle_diff_3d: Coupling cell cycle and differentiation 3-D plots
In tinglab/redPATH: Reconstructing the pseudo development time of cell lineages in single cell RNA-Seq data and applications in cancer.

This function incorporates output from reCAT and redPATH to illustrate some relationship between cell proliferation & differentiation.

1 2	plot_cycle_diff_3d(recat_input, redpath_pseudotime, recat_symbol, color_label)

`recat_input`	This is the normalizedResultLst obtained from reCAT software. It's generally save in a .RData file started with bestEnsemble...
`redpath_pseudotime`	Pseudo development time for differentiation
`recat_symbol`	Cell cycle labels
`color_label`	Cell type labels

1 2	p1 <- plot_cycle_diff_3d(normalizedResultLst, redpath_pseudotime, cell_cycle_labels, cell_type_labels) p1

tinglab/redPATH documentation built on May 31, 2019, 10:37 a.m.

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