selectEdgesConnectedBySelectedNodes: Select the edges connecting selected nodes in Cytoscape...

In tmuetze/Bioconductor_RCy3_the_new_RCytoscape: Display and manipulate graphs in Cytoscape >= 3.3.0

Description

Selects edges in a Cytoscape Network connecting the selected nodes

Usage

selectEdgesConnectedBySelectedNodes(obj)

Arguments

object

Cytoscape network

Value

network with edges selected

Author(s)

Julia Gustavsen, [e-mail]

See Also

createWindowFromSelection, selectEdgesConnectedBySelectedNodes, renameCytoscapeNetwork

Examples

## Not run: 
cw <- CytoscapeWindow('vignette select edges', graph = RCy3::makeSimpleGraph(), overwrite = TRUE)
displayGraph(cw)
selectNodes(cw,"A") # selects specific nodes
getSelectedNodes(cw)
getSelectedEdges(cw)
selectFirstNeighborsOfSelectedNodes(cw)
## This has only selected the nodes, but not the edges in Cytoscape, so we will need to select all of the edges before we make the new subnetwork.
selectEdgesConnectedBySelectedNodes(cw)
getSelectedNodes(cw)
getSelectedEdges(cw)

## End(Not run)

tmuetze/Bioconductor_RCy3_the_new_RCytoscape documentation built on May 31, 2019, 4:39 p.m.