merge_MACS2_peaks: Merge peak files from MACS2 peak caller
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
merge_MACS2_peaks R Documentation
Merge peak files from MACS2 peak caller
Description
Merge peak files from MACS2 peak caller
Usage
merge_MACS2_peaks(peak_file, peak_distance_to_merge, min_peak_size = 200, ref)
Arguments
peak_file
A character specifying the path towards the peak file (BED
or bedGraph format)
peak_distance_to_merge
Maximum distance to merge two peaks
min_peak_size
An integer specifying the minimum size of peaks
ref
Reference genome
Value
Peaks as GRanges
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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| merge_MACS2_peaks | R Documentation |
Merge peak files from MACS2 peak caller
Description
Merge peak files from MACS2 peak caller
Usage
merge_MACS2_peaks(peak_file, peak_distance_to_merge, min_peak_size = 200, ref)
Arguments
peak_file |
A character specifying the path towards the peak file (BED or bedGraph format) |
peak_distance_to_merge |
Maximum distance to merge two peaks |
min_peak_size |
An integer specifying the minimum size of peaks |
ref |
Reference genome |
Value
Peaks as GRanges
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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