separate_BAM_into_clusters: Separate BAM files into cell cluster BAM files
In vallotlab/ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
separate_BAM_into_clusters R Documentation
Separate BAM files into cell cluster BAM files
Description
Separate BAM files into cell cluster BAM files
Usage
separate_BAM_into_clusters(affectation, odir, merged_bam)
Arguments
affectation
An annotation data.frame containing cell_id and
cell_cluster columns
odir
A valid output directory path
merged_bam
A list of merged bam file paths
@importFrom Rsamtools filterBam ScanBamParam
Value
Create one BAM per cluster from one BAM per condition
vallotlab/ChromSCape documentation built on Oct. 15, 2023, 1:47 p.m.
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| separate_BAM_into_clusters | R Documentation |
Separate BAM files into cell cluster BAM files
Description
Separate BAM files into cell cluster BAM files
Usage
separate_BAM_into_clusters(affectation, odir, merged_bam)
Arguments
affectation |
An annotation data.frame containing cell_id and cell_cluster columns |
odir |
A valid output directory path |
merged_bam |
A list of merged bam file paths @importFrom Rsamtools filterBam ScanBamParam |
Value
Create one BAM per cluster from one BAM per condition
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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