vitkl/MItools: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service
Package contains high-level functions for retrieving molecular interaction data from most public databases using PSICQUIC service (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml) and manipulating that data. Useful features include: retrieve full interactome of a given species, retrieve all interactions between two taxonomy groups (taxonomy structure-aware search), query molecular interaction databases using MIQL, subset interaction data by list of protein/gene identifiers, interaction detection method, publication (PMIDs). Depends on PSICQUIC, data.table.
Getting started
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Package details |
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| Author | Vitalii Kleshchevnikov |
| Maintainer | Vitalii Kleshchevnikov <vk7@sanger.ac.uk> |
| License | Apache License 2.0 |
| Version | 0.1.42 |
| URL | https://vitkl.github.io/PItools/ |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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