extractInteractors: Subset MITAB to retrieve interactors, the number of...
In vitkl/MItools: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service
Description
Usage
Arguments
Value
Author(s)
Description
subset molecular interaction data (cleaned MITAB format in a data.table object) with a list of interactors
Usage
1
2
3
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5
extractInteractors(cleanMITAB, taxid = NULL, inverse_filter = F)
uniqueNinteractions(cleanMITAB)
uniqueNinteractors(cleanMITAB, taxid = NULL, inverse_filter = F)
Arguments
cleanMITAB
object of any clean_MItab class (the class that contains "clean_MItab" in it's name and is initially produced by cleanMITAB)
taxid
filter cleanMITAB using this list of taxonomy IDs
inverse_filter
logical, inverse filtering criteria
Value
character vector of interactor IDs or an integer count of interactions or interactors
Author(s)
Vitalii Kleshchevnikov
vitkl/MItools documentation built on May 29, 2019, 2:55 p.m.
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Description Usage Arguments Value Author(s)
Description
subset molecular interaction data (cleaned MITAB format in a data.table object) with a list of interactors
Usage
1 2 3 4 5 | extractInteractors(cleanMITAB, taxid = NULL, inverse_filter = F)
uniqueNinteractions(cleanMITAB)
uniqueNinteractors(cleanMITAB, taxid = NULL, inverse_filter = F)
|
Arguments
cleanMITAB |
object of any clean_MItab class (the class that contains "clean_MItab" in it's name and is initially produced by |
taxid |
filter |
inverse_filter |
logical, inverse filtering criteria |
Value
character vector of interactor IDs or an integer count of interactions or interactors
Author(s)
Vitalii Kleshchevnikov
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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