Files in vitkl/MItools

Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service

.DS_Store

.RData

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DESCRIPTION

LICENSE

NAMESPACE

PItools.Rproj

R/.DS_Store

R/MITABregionFeature.R R/cleanMITAB.R R/cleanMITAB25.R R/cleanMITAB27.R R/edgelist2degree.R R/edgelist2degreeFreq.R R/extractInteractors.R R/fullInteractome.R R/humanViralDegree.R R/interSpeciesInteractome.R R/interactorFeatureTypes.R R/lastIntActRelease.R R/loadBioplex.R R/loadIntActFTP.R R/loadMIontology.R R/loadTaxIDProteome.R R/queryPSICQUIC.R R/queryPSICQUICrlib.R R/randomInteractome.R R/readInteractome.R R/removeSelfLoops.R R/subsetMITABbyID.R R/subsetMITABbyMethod.R R/subsetMITABbyPMIDs.R README.md

docs/LICENSE-text.html

docs/articles/articles/Full_interactomes_interspecies.html

docs/articles/articles/MItools_vs_igraph.html

docs/articles/articles/PItools_vs_igraph.html

docs/articles/articles/study_bias_doc.html

docs/articles/articles/study_bias_doc_files/figure-html/unnamed-chunk-14-1.png

docs/articles/articles/study_bias_doc_files/figure-html/unnamed-chunk-16-1.png

docs/articles/articles/study_bias_doc_files/figure-html/unnamed-chunk-18-1.png

docs/articles/index.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/2019_03_06_mi.obo

docs/reference/2019_04_02_mi.obo

docs/reference/AllLowerTaxID_taxid9606_release2019_02

docs/reference/AllLowerTaxID_taxid9606_release2019_03

docs/reference/MITABregionFeature.html

docs/reference/P74565_2H_interactions_imex_tab27.tsv

docs/reference/P74565_2H_interactions_mentha_tab25.tsv

docs/reference/browseMIontology.html

docs/reference/cleanMITAB.html

docs/reference/cleanMITAB25.html

docs/reference/cleanMITAB27.html

docs/reference/domainEnrichment.html

docs/reference/edgelist2degree.html

docs/reference/edgelist2degreeFreq.html

docs/reference/extractInteractors.html

docs/reference/foldEnrichment.html

docs/reference/foldEnrichmentDist.html

docs/reference/foldEnrichmentPval.html

docs/reference/fullInteractome.html

docs/reference/humanViralDegree.html

docs/reference/index.html

docs/reference/interSpeciesInteractome.html

docs/reference/interactorFeatureTypes.html

docs/reference/lastIntActRelease.html

docs/reference/loadAllIDProteins.html

docs/reference/loadBioplex.html

docs/reference/loadHumanViralPPI.html

docs/reference/loadIntActFTP.html

docs/reference/loadMIontology.html

docs/reference/loadTaxIDAllLower.html

docs/reference/loadTaxIDProteins.html

docs/reference/queryPSICQUIC.html

docs/reference/queryPSICQUICrlib.html

docs/reference/randomInteractome.html

docs/reference/readInteractome.html

docs/reference/removeInteractionNoFASTA.html

docs/reference/removeInteractionObsoleteID.html

docs/reference/removeSelfLoops.html

docs/reference/reorderMITAB25.html

docs/reference/reorderMITAB27.html

docs/reference/subsetMITABbyID.html

docs/reference/subsetMITABbyMethod.html

docs/reference/subsetMITABbyPMIDs.html

man/MITABregionFeature.Rd man/browseMIontology.Rd man/cleanMITAB.Rd man/cleanMITAB25.Rd man/cleanMITAB27.Rd man/edgelist2degree.Rd man/edgelist2degreeFreq.Rd man/extractInteractors.Rd man/fullInteractome.Rd man/humanViralDegree.Rd man/interSpeciesInteractome.Rd man/interactorFeatureTypes.Rd man/lastIntActRelease.Rd man/loadAllIDProteins.Rd man/loadBioplex.Rd man/loadHumanViralPPI.Rd man/loadIntActFTP.Rd man/loadMIontology.Rd man/loadTaxIDAllLower.Rd man/loadTaxIDProteins.Rd man/queryPSICQUIC.Rd man/queryPSICQUICrlib.Rd man/randomInteractome.Rd man/readInteractome.Rd man/removeInteractionNoFASTA.Rd man/removeInteractionObsoleteID.Rd man/removeSelfLoops.Rd man/reorderMITAB25.Rd man/reorderMITAB27.Rd man/subsetMITABbyID.Rd man/subsetMITABbyMethod.Rd man/subsetMITABbyPMIDs.Rd tests.R

vignettes/articles/2019_04_02_mi.obo

vignettes/articles/Full_interactomes_interspecies.Rmd

vignettes/articles/P74565_2H_interactions_imex_tab27.tsv

vignettes/articles/P74565_2H_interactions_mentha_tab25.tsv

vignettes/articles/PItools_vs_igraph.Rmd

vignettes/articles/entrezgene156_interactions_BioGrid_tab25.tsv

vignettes/articles/study_bias_doc.Rmd

vitkl/MItools documentation built on May 29, 2019, 2:55 p.m.