Files in vitkl/MItools
Molecular interaction data tools, retrieving data using PSICQUIC service

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2017_08_25_mi.obo
DESCRIPTION
Full_interactomes_interspecies.Rmd
Full_interactomes_interspecies.html
LICENSE
MItools.Rproj
MItools_vs_igraph.Rmd
NAMESPACE
R/.DS_Store
R/GRangesINinteractionSubsetFASTA.R R/InterProEntryTypes.R R/MITABregionFeature.R R/PPInetwork2SLIMFinder.R R/PermutResult2D.R R/QSLIMFinderCommand.R R/SLIMFinderOcc2GRanges.R R/benchmarkMotifs.R R/benchmarkMotifsROC.R R/centerDomains.R R/cleanMITAB.R R/cleanMITAB25.R R/cleanMITAB27.R R/collapseByInterProID.R R/domainEnrichment.R R/domainProteinPairMatch.R R/downloadFasta.R R/downloadFastaMixed.R R/downloadFastaPostproc.R R/edgelist2degree.R R/edgelist2degreeFreq.R R/extractInteractors.R R/filterInteractionSubsetFASTA_list.R R/findOverlapsBench.R R/foldEnrichment.R R/foldEnrichmentDist.R R/foldEnrichmentPval.R R/formula2colnames.R R/fullInteractome.R R/humanViralDegree.R R/interSpeciesInteractome.R R/interactionSubsetFASTA.R R/interactorFeatureTypes.R R/lastIntActRelease.R R/loadBioplex.R R/loadIntActFTP.R R/loadInterProTree.R R/loadMIontology.R R/loadTaxIDProteome.R R/mInteractionSubsetFASTA.R R/parReplicate.R R/permutationPval.R R/plotEnrichment.R R/printMotifDomainTable.R R/queryPSICQUIC.R R/queryPSICQUICrlib.R R/randomGRanges.R R/randomInteractome.R R/readInteractome.R R/readQSLIMFinderMain.R R/recodeFASTA.R R/removeSelfLoops.R R/runCompariMotif3.R R/runQSLIMFinder.R R/subset2setsBy1ID.R R/subsetMITABbyID.R R/subsetMITABbyMethod.R R/subsetMITABbyPMIDs.R R/writeInteractionSubsetFASTA_list.R README.md man/ELMdb2GRanges.Rd man/GRangesINinteractionSubsetFASTA.Rd man/MITABregionFeature.Rd man/PPInetwork2SLIMFinder.Rd man/PermutResult2D.Rd man/QSLIMFinderCommand.Rd man/SLIMFinderOcc2GRanges.Rd man/XYZ.p.adjust.Rd man/benchmarkMotifs.Rd man/benchmarkMotifsROC.Rd man/browseMIontology.Rd man/centerDomains.Rd man/cleanMITAB.Rd man/cleanMITAB25.Rd man/cleanMITAB27.Rd man/collapseByInterProID.Rd man/domainEnrichment.Rd man/domainProteinPairMatch.Rd man/downloadFasta.Rd man/downloadFastaMixed.Rd man/downloadFastaPostproc.Rd man/edgelist2degree.Rd man/edgelist2degreeFreq.Rd man/extractInteractors.Rd man/filterBYmotifType.Rd man/filterInteractionSubsetFASTA_list.Rd man/findOverlapsBench.Rd man/foldEnrichment.Rd man/foldEnrichmentDist.Rd man/foldEnrichmentPval.Rd man/fullInteractome.Rd man/humanViralDegree.Rd man/interSpeciesInteractome.Rd man/interactionSubsetFASTA.Rd man/interactionSubsetMapID.Rd man/interactorFeatureTypes.Rd man/lastIntActRelease.Rd man/listInteractionSubsetFASTA.Rd man/listSingleInteractFromSet2.Rd man/loadAllIDProteins.Rd man/loadBioplex.Rd man/loadHumanViralPPI.Rd man/loadIntActFTP.Rd man/loadInterProTree.Rd man/loadMIontology.Rd man/loadTaxIDAllLower.Rd man/loadTaxIDProteins.Rd man/merge2GRangesmcols.Rd man/motifVariantClass.Rd man/parReplicate.Rd man/permutationPval.Rd man/permutationPvalHelper.Rd man/plotEnrichment.Rd man/printMotifDomainTable.Rd man/queryPSICQUIC.Rd man/queryPSICQUICrlib.Rd man/randomGRanges.Rd man/randomInteractome.Rd man/readInterProGFF3.Rd man/readInteractome.Rd man/readQSLIMFinderMain.Rd man/recodeANDinteractionSubsetFASTA.Rd man/recodeFASTA.Rd man/reduceOverlappingGRanges.Rd man/reduceWithMcols.Rd man/removeInteractionNoFASTA.Rd man/removeInteractionObsoleteID.Rd man/removeSelfLoops.Rd man/reorderMITAB25.Rd man/reorderMITAB27.Rd man/runCompariMotif3.Rd man/runQSLIMFinder.Rd man/singleInteractFromSet2.Rd man/subset2setsBy1ID.Rd man/subsetMITABbyID.Rd man/subsetMITABbyMethod.Rd man/subsetMITABbyPMIDs.Rd man/writeInteractionSubsetFASTA_list.Rd sample_interactome_strategies.Rmd tests.R
vitkl/MItools documentation built on Dec. 12, 2017, 1:41 a.m.