API for vitkl/MItools
Molecular interaction data tools, retrieving data using PSICQUIC service

Global functions
ELMdb2GRanges Man page
GRangesINinteractionSubsetFASTA Man page
LSFrunQSLIMFinder Man page
MITABregionFeature Man page Source code
PPInetwork2SLIMFinder Man page
PermutResult2D Man page
QSLIMFinderCommand Man page
SLIMFinderOcc2GRanges Man page
XYZ.p.adjust Man page
addInterProEntryTypes Man page
aggregatePermutations Man page
benchmarkMotifs Man page
benchmarkMotifsROC Man page
browseMIontology Man page Source code
calcObservedStatistic Man page
calcPermutedStatistic Man page
centerDomains Man page
checkSelectNodes Man page
checkSelectNodesList Man page
cleanMITAB Man page Source code
cleanMITAB25 Man page Source code
cleanMITAB27 Man page Source code
collapseByInterProID Man page
domainEnrichment Man page Source code
domainProteinPairMatch Man page
downloadFasta Man page
downloadFastaMixed Man page
downloadFastaPostproc Man page
edgelist2degree Man page Source code
edgelist2degreeFreq Man page Source code
edgelist2degree_slow Man page Source code
extractInteractors Man page Source code
filterBYmotifType Man page
filterByFormula Man page
filterByList Man page
filterInteractionSubsetFASTA_list Man page
findOverlapsBench Man page
foldEnrichment Man page Source code
foldEnrichmentDist Man page Source code
foldEnrichmentDist_pasteSplit Source code
foldEnrichmentPval Man page Source code
formula2colnames Man page
formula2nodes Man page
fullInteractome Man page Source code
generateDirName Source code
groupQSLIMFinderCommand Man page
humanViralDegree Man page Source code
interSpeciesInteractome Man page Source code
interactionSubsetFASTA Man page
interactionSubsetMapID Man page
interactorFeatureTypes Man page Source code
jobsCrashed Man page
lastIntActRelease Man page Source code
listInteractionSubsetFASTA Man page
listReleases Source code
listSingleInteractFromSet2 Man page
loadAllFASTA Man page
loadAllIDProteins Man page Source code
loadBioplex Man page Source code
loadHumanViralPPI Man page Source code
loadIntActFTP Man page Source code
loadInterProTree Man page
loadMIontology Man page Source code
loadTaxIDAllLower Man page Source code
loadTaxIDProteins Man page Source code
mBenchmarkMotifs Man page
mBenchmarkMotifsROC Man page
mQSLIMFinderCommand Man page
merge2GRangesmcols Man page
modifyMemoryInBsub Man page
motifVariantClass Man page
node_attr2colnames Man page
observedVSpermuted Man page
parReplicate Man page
permutationPval Man page
permutationPvalHelper Man page
plotEnrichment Man page
plotFoldEnrichmentDist Source code
print.RAW_MItab25 Source code
print.RAW_MItab25_fullInteractome Source code
print.RAW_MItab25_interSpeciesInteractome Source code
print.RAW_MItab27 Source code
print.RAW_MItab27_fullInteractome Source code
print.RAW_MItab27_interSpeciesInteractome Source code
print.clean_MItab25 Source code
print.clean_MItab25_fullInteractome Source code
print.clean_MItab25_fullInteractome_subset Source code
print.clean_MItab25_interSpeciesInteractome Source code
print.clean_MItab25_interSpeciesInteractome_subset Source code
print.clean_MItab25_randomInteractome Source code
print.clean_MItab25_subset Source code
print.clean_MItab27 Source code
print.clean_MItab27_fullInteractome Source code
print.clean_MItab27_fullInteractome_subset Source code
print.clean_MItab27_interSpeciesInteractome Source code
print.clean_MItab27_interSpeciesInteractome_subset Source code
print.clean_MItab27_subset Source code
printMotifDomainTable Man page
printSubsetByMethodDetails Source code
printSubsetByPMIDsDetails Source code
queryOCCByMCOL Man page
queryPSICQUIC Man page Source code
queryPSICQUICrlib Man page Source code
randomGRanges Man page
randomInteractome Man page Source code
readInterProGFF3 Man page
readInteractome Man page Source code
readQSLIMFinderMain Man page
readQSLIMFinderOccurence Man page
recodeANDinteractionSubsetFASTA Man page
recodeFASTA Man page
reduceOverlappingGRanges Man page
reduceWithMcols Man page
removeInteractionNoFASTA Man page Source code
removeInteractionObsoleteID Man page Source code
removeSelfLoops Man page Source code
reorderMITAB25 Man page Source code
reorderMITAB27 Man page Source code
runCompariMotif3 Man page
runQSLIMFinder Man page
singleInteractFromSet2 Man page
subset2setsBy1ID Man page
subsetMITABbyID Man page Source code
subsetMITABbyMethod Man page Source code
subsetMITABbyPMIDs Man page Source code
uniqueNinteractions Man page Source code
uniqueNinteractors Man page Source code
writeInteractionSubsetFASTA_list Man page
writePatternList Man page
vitkl/MItools documentation built on Sept. 26, 2018, 12:19 p.m.