Description Usage Arguments Value Author(s) See Also Examples
filter molecular interaction data by Pubmed ID of publications
1 | subsetMITABbyPMIDs(MITABdata, PMIDs = NULL, inverse_filter = F)
|
MITABdata |
object of any clean_MItab class (the class that contains "clean_MItab" in it's name and is initially produced by |
PMIDs |
character or character vector, return only interactions reported by these Pubmed IDs |
inverse_filter |
logical, inverse filtering criteria |
return only interactions reported by PMIDs
Vitalii Kleshchevnikov
subsetMITABbyMethod
), subsetMITABbyID
)
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | {
# Download all human interaction data
full = fullInteractome(taxid = "9606", database = "IntActFTP",
clean = TRUE, protein_only = TRUE)
# subset unpublished Vidal group data
Vidal = subsetMITABbyPMIDs(MITABdata = full,
PMIDs = "unassigned1304")
# subset both published and unpublished Vidal group data
Vidal_all = subsetMITABbyPMIDs(MITABdata = full,
PMIDs = c("25416956", "unassigned1304"))
# subset Mattias Mann 2015 paper data
Mann = subsetMITABbyPMIDs(MITABdata = full,
PMIDs = "26496610")
}
|
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