subsetMITABbyID: Retrieve interactions for a list of interactors (given data...

In vitkl/MItools: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service

Description

subset molecular interaction data with a list of interactors

Usage

subsetMITABbyID(MITABdata, ID_seed, within_seed = F,
  only_seed2nonseed = F)

Arguments

MITABdata	molecular interaction data, object of class "clean_MItab25", "clean_MItab27", "clean_MItab25_fullInteractome", "clean_MItab27_fullInteractome"
ID_seed	filter MITABdata using this list of interactors
within_seed	logical, should subsetMITABbyID return only interactions between molecules in ID_seed (TRUE) or any interactions molecules in ID_seed have in MITABdata

Value

molecular interaction data, object of class 'class of MITABdata'_subset (for example, clean_MItab27_subset, basically list), a subset of MITABdata that contains interactions for ID_seed molecules, and additionally includes the ID_seed and within_seed

Author(s)

Vitalii Kleshchevnikov

See Also

subsetMITABbyMethod), subsetMITABbyPMIDs)

vitkl/MItools documentation built on May 29, 2019, 2:55 p.m.