vitkl/MItools: Molecular interaction data tools, retrieving data using PSICQUIC service

Package contains high-level functions for retrieving molecular interaction data from IntAct database, using PSICQUIC web service and manipulating that data. Useful options include: retrieve full interactome of a given species, query molecular interaction databases using MIQL, retrieve PPI for a random set of proteins, download protein sequences (FASTA) for canonical, isoform, post-processed chain id. This package also includes functions specific to my research project at Petsalaki group at EMBL-EBI. Builds upon Bioconductor PSICQUIC package and uses data.table.

Getting started

Package details

AuthorVitalii Kleshchevnikov
MaintainerVitalii Kleshchevnikov <[email protected]>
LicenseGNU GPLv3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
vitkl/MItools documentation built on Nov. 20, 2018, 1:22 a.m.