vitkl/MItools: Molecular interaction data tools, retrieving data using PSICQUIC service
Version 0.1.36

Package contains high-level functions for retrieving molecular interaction data using PSICQUIC service and manipulating that data. Useful options include: query molecular interaction databases using MIQL, retrieve full interactome of a given species, retrieve PPI for a random set of proteins, download protein sequences (FASTA) for canonical, isoform, post-processed chain id. This package also includes functions specific to my research project at Petsalaki group at EMBL-EBI. Builds upon Bioconductor PSICQUIC package and uses data.table.

Getting started

Package details

AuthorVitalii Kleshchevnikov
MaintainerVitalii Kleshchevnikov <[email protected]>
LicenseGNU GPLv3
Version0.1.36
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("vitkl/MItools")
vitkl/MItools documentation built on Dec. 10, 2017, 4:36 a.m.