vitkl/MItools: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service

Package contains high-level functions for retrieving molecular interaction data from most public databases using PSICQUIC service (http://www.ebi.ac.uk/Tools/webservices/psicquic/view/main.xhtml) and manipulating that data. Useful features include: retrieve full interactome of a given species, retrieve all interactions between two taxonomy groups (taxonomy structure-aware search), query molecular interaction databases using MIQL, subset interaction data by list of protein/gene identifiers, interaction detection method, publication (PMIDs). Depends on PSICQUIC, data.table.

Getting started

Package details

AuthorVitalii Kleshchevnikov
MaintainerVitalii Kleshchevnikov <[email protected]>
LicenseApache License 2.0
Version0.1.42
URL https://vitkl.github.io/PItools/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("vitkl/MItools")
vitkl/MItools documentation built on May 29, 2019, 2:55 p.m.