loadIntActFTP: load all data from IntAct ftp

In vitkl/MItools: Protein interaction data tools: retrieving data from IntAct and most other databases using PSICQUIC service

Description

loadIntActFTP loads all data stored on ftp://ftp.ebi.ac.uk/pub/databases/intact/current/psimitab/ in intact.txt file. Details: https://www.ebi.ac.uk/intact/downloads. This file contains the data from the following databases "IntAct", "MINT", "DIP", "bhf-ucl", "MPIDB", "MatrixDB", "HPIDb","I2D-IMEx","InnateDB-IMEx", "MolCon", "UniProt", "MBInfo"

Usage

loadIntActFTP(dir, release = NULL)

Arguments

dir	directory where to save/look for the local copy
release	which locally saved IntAct release to load (the default is to load the latest and read it into R)

Value

loadIntActFTP saves intact.txt to a file, returns the object of class RAW_MItab27

Author(s)

Vitalii Kleshchevnikov

Vitalii Kleshchevnikov

Examples

{
loadIntActFTP("./", release = NULL)
}

vitkl/MItools documentation built on May 29, 2019, 2:55 p.m.