getMDFR.Fisheries.CatchBiomass: Get fishery catch biomass time series from model results from...

In wStockhausen/rTCSAM02: A set of tools to set up input for, and interact with output from, TCSAM02 model runs

Get fishery catch biomass time series from model results from TCSAM02 model runs as a dataframe

Description

Function to get fishery catch biomass time series from model results from TCSAM02 model runs as a dataframe.

Usage

getMDFR.Fisheries.CatchBiomass(
  tcsams,
  category = c("captured", "discarded", "retained", "discard mortality", "index"),
  cast = "x",
  verbose = FALSE
)

Arguments

tcsams	single tcsam02.rep object, tcsam02.resLst object, or named list of the latter
category	'captured','discarded','retained', 'discard mortality', or 'index'
cast	casting formula (or NULL) for excluding x,m,s,z factor levels from an average-at-size across unspecified factors
verbose	flag (T/F) to print debug info

Details

If 'cast' is not NULL (nor blank), the final cast'ing formula is "case+process+fleet+category+type+pc+y+cast~.".

Value

dataframe in canonical format

wStockhausen/rTCSAM02 documentation built on April 16, 2024, 6:25 a.m.