getMDFR.Fisheries.CatchBiomass: Get fishery catch biomass time series from model results from...

Description Usage Arguments Details Value

View source: R/getMDFR.Fisheries.CatchBiomass.R

Description

Function to get fishery catch biomass time series from model results from TCSAM02 model runs as a dataframe.

Usage

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getMDFR.Fisheries.CatchBiomass(tcsams, category = c("captured",
  "discarded", "retained", "discard mortality", "index"), cast = "x",
  verbose = FALSE)

Arguments

tcsams

- single tcsam02.rep object, tcsam02.resLst object, or named list of the latter

category

- 'captured','discarded','retained', 'discard mortality', or 'index'

cast

- casting formula (or NULL) for excluding x,m,s,z factor levels from an average-at-size across unspecified factors

verbose

- flag (T/F) to print debug info

Details

If 'cast' is not NULL (nor blank), the final cast'ing formula is "case+process+fleet+category+type+pc+y+cast~.".

Value

dataframe in canonical format


wStockhausen/rTCSAM02 documentation built on Dec. 7, 2018, 7:58 a.m.