getMDFR.OFCs.DataComponents: Get data-related components from the objective function for a...

In wStockhausen/rTCSAM02: A set of tools to set up input for, and interact with output from, TCSAM02 model runs

Get data-related components from the objective function for a (list of) TCSAM02 model(s) as a dataframe

Description

Function to get data-related components from the objective function for a (list of) TCSAM02 model(s) as a dataframe.

Usage

getMDFR.OFCs.DataComponents(
  obj,
  categories = c("all", "surveys", "fisheries", "growthdata", "maturityogivedata",
    "effortdata"),
  verbose = FALSE
)

Arguments

obj	a single tcsam02 rep object, a single tcsam02 resLst object, or a named list of such
categories	data-related objective function components to get ("all","surveys","fisheries","growthdata","maturitydata","effortdata")
verbose	flag (T/F) to print diagnostic info

Details

Returned dataframe has columns:

• case - model case (blank, to be filled in by caller if obj is not a list of tcsam02.resLst objects)

• category - fleet category

• fleet - fleet name

• catch.type - catch type

• data.type - data type

• fit.type - fit type

• nll.type - likelihood type

• y - year

• x - sex

• m - maturity state

• s - shell condition

• rmse - root mean squared error

• wgt - likelihood weight

• nll - (unweighted) negative log-likelihood

• objfun - objective function value

Value

dataframe

wStockhausen/rTCSAM02 documentation built on Sept. 27, 2024, 6:52 a.m.