getMDFR.OFCs.GrowthData: Get objective function components for growth data from a...

In wStockhausen/rTCSAM02: A set of tools to set up input for, and interact with output from, TCSAM02 model runs

Get objective function components for growth data from a tcsam02.rep object

Description

Function to get objective function components for growth data from a tcsam02.rep object.

Usage

getMDFR.OFCs.GrowthData(obj, verbose = FALSE)

Arguments

obj	a tcsam02.resLst or tcsam02.rep object
verbose	flag (T/F) to print diagnostic info

Details

Returned dataframe has columns:

• case - model case (blank, to be filled in by caller)

• category - "growth data"

• fleet - dummy value ("")

• catch.type - dummy value ("")

• data.type - data type ("growth data")

• fit.type - dummy value ("")

• nll.type - likelihood type

• y - year (dummy = 'all)

• x - sex

• m - maturity state ("immature")

• s - shell condition ("new shell")

• rmse - root mean squared error

• wgt - likelihood weight

• nll - (unweighted) negative log-likelihood

• objfun - objective function value

Value

a dataframe

wStockhausen/rTCSAM02 documentation built on April 16, 2024, 6:25 a.m.