getMDFR.OFCs.FleetData: Get objective function components for growth data from a...

In wStockhausen/rTCSAM02: A set of tools to set up input for, and interact with output from, TCSAM02 model runs

Get objective function components for growth data from a tcsam02.resLst or tcsam02.rep object

Description

Function to get objective function components for growth data from a tcsam02.resLst or tcsam02.rep object.

Usage

getMDFR.OFCs.FleetData(
  obj,
  category = c("surveys", "fisheries"),
  verbose = FALSE
)

Arguments

obj	a tcsam02.resLst or tcsam02.rep object
category	fleet category ("surveys" or "fisheries")
verbose	flag (T/F) to print diagnostic info

Details

Returned dataframe has columns:

• case - model case (blank, to be filled in by caller)

• category - fleet category

• fleet - fleet name

• catch.type - catch type

• data.type - data type

• fit.type - fit type

• nll.type - likelihood type

• y - year

• x - sex

• m - maturity state

• s - shell condition

• rmse - root mean squared error

• wgt - likelihood weight

• nll - (unweighted) negative log-likelihood

• objfun - objective function value

Value

a dataframe

wStockhausen/rTCSAM02 documentation built on Aug. 27, 2024, 7:18 p.m.