API for wenbostar/metaX
A flexible and comprehensive software for processing omics data.
| Global functions | |
|---|---|
| .SSE | Source code |
| .glog | Source code |
| .jglog | Source code |
| HotE | Source code |
| addIdentInfo | Man page |
| addValueNorm<- | Man page |
| autoRemoveOutlier | Man page |
| batchCorrect | Source code |
| bootPLSDA | Man page Source code |
| calcAUROC | Man page |
| calcCorBetweenProteinAndRNA | Source code |
| calcMeanCurve | Source code |
| calcRatio | Source code |
| calcVIP | Man page |
| calculateCI | Source code |
| center<- | Man page |
| checkPvaluePlot | Man page |
| checkQCPlot | Man page |
| class2ind | Source code |
| computeHL | Source code |
| cor.network | Man page Source code |
| countMissingValue | Source code |
| createModels | Man page Source code |
| dataClean | Man page |
| dir.case<- | Man page |
| dir.ctrl<- | Man page |
| doQCRLSC | Man page |
| doglog | Source code |
| featureSelection | Man page Source code |
| filterPeaks | Man page |
| filterQCPeaks | Man page |
| filterQCPeaksByCV | Man page |
| getPeaksTable | Man page |
| getTable | Man page |
| group.bw0<- | Man page |
| group.bw<- | Man page |
| group.max<- | Man page |
| group.minfrac<- | Man page |
| group.minsamp<- | Man page |
| group.mzwid0<- | Man page |
| group.mzwid<- | Man page |
| group.sleep<- | Man page |
| hasQC | Man page |
| idres<- | Man page |
| importDataFromMetaboAnalyst | Man page |
| importDataFromQI | Man page |
| importDataFromXCMS | Man page |
| kfold<- | Man page |
| logTransform | Source code |
| makeDirectory | Man page |
| makeMetaboAnalystInput | Man page |
| metaColors | Source code |
| metaXpara-class | Man page |
| metaXpipe | Man page |
| metaboliteAnnotation | Man page Source code |
| method<- | Man page |
| missValueImputeMethod<- | Man page |
| missingValueImpute | Man page |
| modelEval | Source code |
| myCalcAUROC | Man page Source code |
| myPLSDA | Man page |
| mybootPLSDA | Source code |
| ncomp<- | Man page |
| normalize | Man page |
| nperm<- | Man page |
| oplsDAPara-class | Man page |
| outdir<- | Man page |
| pathwayAnalysis | Man page Source code |
| peakFinder | Man page |
| peakStat | Man page |
| peaksData<- | Man page |
| permutePLSDA | Man page Source code |
| plotCV | Man page |
| plotCorHeatmap | Man page Source code |
| plotHeatMap | Man page |
| plotIntDistr | Man page |
| plotLoading | Man page |
| plotMissValue | Man page |
| plotNetwork | Man page Source code |
| plotPCA | Man page |
| plotPLSDA | Man page |
| plotPeakBox | Man page |
| plotPeakMeanDist | Man page |
| plotPeakNumber | Man page |
| plotPeakSN | Man page |
| plotPeakSumDist | Man page |
| plotQC | Man page |
| plotQCRLSC | Man page |
| plotROC | Man page Source code |
| plotTIC | Man page |
| plotTreeMap | Man page |
| plsDAPara-class | Man page |
| powerAnalyst | Man page Source code |
| preProcess | Man page Source code |
| prefix<- | Man page |
| qcRlscSpan<- | Man page |
| ratioPairs<- | Man page |
| rawPeaks<- | Man page |
| reSetPeaksData | Man page |
| removeSample | Man page |
| retcor.method<- | Man page |
| retcor.plottype<- | Man page |
| retcor.profStep<- | Man page |
| rfSelection | Source code |
| runOPLSDA | Man page Source code |
| runPLSDA | Man page Source code |
| run_PLSDA | Source code |
| sampleListFile<- | Man page |
| scale<- | Man page |
| selectBestComponent | Man page Source code |
| splitData | Source code |
| svmRadialSelection | Source code |
| svrNormalize | Man page Source code |
| t<- | Man page |
| transformation | Man page Source code |
| validation<- | Man page |
| xcmsSet.fitgauss<- | Man page |
| xcmsSet.fwhm<- | Man page |
| xcmsSet.integrate<- | Man page |
| xcmsSet.max<- | Man page |
| xcmsSet.method<- | Man page |
| xcmsSet.mzCenterFun<- | Man page |
| xcmsSet.mzdiff<- | Man page |
| xcmsSet.nSlaves<- | Man page |
| xcmsSet.noise<- | Man page |
| xcmsSet.peakwidth<- | Man page |
| xcmsSet.polarity<- | Man page |
| xcmsSet.ppm<- | Man page |
| xcmsSet.prefilter<- | Man page |
| xcmsSet.profparam<- | Man page |
| xcmsSet.sleep<- | Man page |
| xcmsSet.snthresh<- | Man page |
| xcmsSet.step<- | Man page |
| xcmsSet.verbose.columns<- | Man page |
| xcmsSetObj<- | Man page |
| zero2NA | Man page |
