Files in wenbostar/metaX

A flexible and comprehensive software for processing omics data.

R/MetaboliteIdentify.R R/ROC.R R/bootPLSDA.R R/fselection.R R/metaX.R R/model.R R/network.R R/omics.R R/pathwayAnalysis.R R/powerAnalysis.R R/prep.R R/tool.R README.md inst/unitTests/test_hasQC.R inst/unitTests/test_metaXpipe.R inst/unitTests/test_rfSelection.R man/addIdentInfo.Rd man/addValueNorm.Rd man/autoRemoveOutlier.Rd man/bootPLSDA.Rd man/calcAUROC.Rd man/calcVIP.Rd man/center.Rd man/checkPvaluePlot.Rd man/checkQCPlot.Rd man/cor.network.Rd man/createModels.Rd man/dataClean.Rd man/dir.case.Rd man/dir.ctrl.Rd man/doQCRLSC.Rd man/featureSelection.Rd man/filterPeaks.Rd man/filterQCPeaks.Rd man/filterQCPeaksByCV.Rd man/getPeaksTable.Rd man/getTable.Rd man/group.bw.Rd man/group.bw0.Rd man/group.max.Rd man/group.minfrac.Rd man/group.minsamp.Rd man/group.mzwid.Rd man/group.mzwid0.Rd man/group.sleep.Rd man/hasQC.Rd man/idres.Rd man/importDataFromMetaboAnalyst.Rd man/importDataFromQI.Rd man/importDataFromXCMS.Rd man/kfold.Rd man/makeDirectory.Rd man/makeMetaboAnalystInput.Rd man/metaXpara-class.Rd man/metaXpipe.Rd man/metaboliteAnnotation.Rd man/method.Rd man/missValueImputeMethod.Rd man/missingValueImpute.Rd man/myCalcAUROC.Rd man/myPLSDA.Rd man/ncomp.Rd man/normalize.Rd man/nperm.Rd man/oplsDAPara-class.Rd man/outdir.Rd man/pathwayAnalysis.Rd man/peakFinder.Rd man/peakStat.Rd man/peaksData.Rd man/permutePLSDA.Rd man/plotCV.Rd man/plotCorHeatmap.Rd man/plotHeatMap.Rd man/plotIntDistr.Rd man/plotLoading.Rd man/plotMissValue.Rd man/plotNetwork.Rd man/plotPCA.Rd man/plotPLSDA.Rd man/plotPeakBox.Rd man/plotPeakMeanDist.Rd man/plotPeakNumber.Rd man/plotPeakSN.Rd man/plotPeakSumDist.Rd man/plotQC.Rd man/plotQCRLSC.Rd man/plotROC.Rd man/plotTIC.Rd man/plotTreeMap.Rd man/plsDAPara-class.Rd man/powerAnalyst.Rd man/preProcess.Rd man/prefix.Rd man/qcRlscSpan.Rd man/ratioPairs.Rd man/rawPeaks.Rd man/reSetPeaksData.Rd man/removeSample.Rd man/retcor.method.Rd man/retcor.plottype.Rd man/retcor.profStep.Rd man/runOPLSDA.Rd man/runPLSDA.Rd man/sampleListFile.Rd man/scale.Rd man/selectBestComponent.Rd man/svrNormalize.Rd man/t.Rd man/transformation.Rd man/validation.Rd man/xcmsSet.fitgauss.Rd man/xcmsSet.fwhm.Rd man/xcmsSet.integrate.Rd man/xcmsSet.max.Rd man/xcmsSet.method.Rd man/xcmsSet.mzCenterFun.Rd man/xcmsSet.mzdiff.Rd man/xcmsSet.nSlaves.Rd man/xcmsSet.noise.Rd man/xcmsSet.peakwidth.Rd man/xcmsSet.polarity.Rd man/xcmsSet.ppm.Rd man/xcmsSet.prefilter.Rd man/xcmsSet.profparam.Rd man/xcmsSet.sleep.Rd man/xcmsSet.snthresh.Rd man/xcmsSet.step.Rd man/xcmsSet.verbose.columns.Rd man/xcmsSetObj.Rd man/zero2NA.Rd tests/runTests.R vignettes/metaX.pdf